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Home » whole genome sequencing

Articles Tagged with ''whole genome sequencing''

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Four-Year UK Foodborne Pathogen Surveillance Program Concludes, FSA to Launch New Initiative

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Food Safety Magazine Editorial Team
September 30, 2025

The UK Food Standards Agency (FSA) has reported on the outcomes of the recently concluded, £24 million Pathogen Surveillance in Agriculture, Food, and the Environment (PATH-SAFE) program, and announced that it will continue to build on the work of PATH-SAFE with a national Food Surveillance Program.


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Food Safety Five Ep. 14: Scientific Advancements to Address Cronobacter in Infant Formula

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Bailee Henderson
August 19, 2025

This episode of Food Safety Five discusses two scientific developments that could help address the risk posed by Cronobacter in powdered infant formula: an AI-powered analysis of genetic data for C. sakazakii, providing new insight into why it persists in low-moisture foods, and the development of a promising new assay.


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raw chicken on display at supermarket

The Spread of Antibiotic Resistance Genes in Salmonella is a Problem for U.S. Poultry, Study Shows

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Bailee Henderson
July 23, 2025

A study of Salmonella isolated from retail poultry meat has demonstrated a concerning presence of antimicrobial resistance (AMR) genes with the ability to transfer between bacteria.


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bioMérieux Acquires Neoprospecta
BIZTRACKS

bioMérieux Acquires Neoprospecta, a Brazilian Provider of Food Industry Genomics Solutions

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Food Safety Magazine Editorial Team
July 22, 2025

bioMérieux has acquired Neoprospecta, a Brazil-based developer of data and genomics solutions for food industry quality assurance programs and microbiological risk prevention.


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Genetics Could Explain Why Cronobacter Thrives in Powdered Infant Formula, AI-Driven Study Shows

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Bailee Henderson
July 16, 2025

Using an artificial intelligence (AI) model to standardize and analyze a massive, global set of whole genome sequencing (WGS) data for Cronobacter sakazakii, University of Maryland researchers have discovered genetic traits that may explain the pathogen’s persistence and virulence in low-moisture foods like powdered infant formula. 


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Top view of several sandwiches

FDA Provides Update on Listeria Outbreak Related to Products of Fresh & Ready Foods LLC

May 12, 2025

Initially launched in 2024, the investigation was reopened in April 2025. Whole genome sequencing (WGS) analysis confirmed that the strain of Listeria found at Fresh & Ready Foods LLC matches the strain of Listeria causing illnesses in this outbreak.


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Ep. 191. Dr. Edward Dudley: Wastewater Monitoring for Foodborne Pathogen Surveillance

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Food Safety Magazine Editorial Team
April 8, 2025

In this episode of Food Safety Matters, we speak to Dr. Edward Dudley, Director of the E. coli Reference Center and Professor of Food Science at Penn State University, about the potential for wastewater monitoring to aid foodborne pathogen surveillance and bolster foodborne illness reporting. 


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doctor speaking to a kid

Food Safety Five Ep. 11: New Foodborne Illness Data and Research From CDC

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Bailee Henderson
April 1, 2025

This episode of Food Safety Five discusses newly published CDC data about the pathogens causing foodborne illness and contributing factors of outbreaks, as well as research by CDC, USDA, and FDA scientists exploring the use of AI analysis of whole genome sequencing data for foodborne illness source attribution.


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scientist preparing WGS instrument

Requirements for Mandatory Foodborne Pathogen WGS Analysis, Data Submission in EU

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Food Safety Magazine Editorial Team
March 28, 2025

The European Commission published a FAQ document to clarify the requirements of Regulation (EU) 2025/179, which mandates whole genome sequencing (WGS) testing and data reporting for important foodborne pathogens when suspected to be associated with a foodborne illness outbreak.


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digital illustration of a dna strand within a test tube

USDA Study Shows WGS Could Detect Salmonella on Food-Contact Surfaces Earlier Than Culturing

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Bailee Henderson
March 17, 2025

A new study by USDA researchers has shown that long-read whole genome sequencing (WGS) could detect Salmonella attachment to food-contact surfaces earlier than traditional culture-based methods, allowing for sanitation interventions to be applied before the maturation of robust and difficult-to-remove biofilms.


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