Food Safety
search
Ask Food Safety AI
cart
facebook twitter linkedin instagram youtube
  • Sign In
  • Create Account
  • Sign Out
  • My Account
Food Safety
  • NEWS
    • Latest News
    • Sponsored Insights
    • Sponsored White Papers
  • PRODUCTS
  • TOPICS
    • Contamination Control
    • Food Types
    • Management
    • Process Control
    • Regulatory
    • Sanitation
    • Supply Chain
    • Testing and Analysis
  • PODCAST
  • EXCLUSIVES
    • Food Safety Five Newsreel
    • eBooks
    • FSM Distinguished Service Award
    • Interactive Product Spotlights
    • Videos
  • BUYER'S GUIDE
  • MORE
    • NEWSLETTERS >
      • Archive Issues
      • Subscribe to eNews
    • Store
    • ASK FSM AI
  • WEBINARS
  • FOOD SAFETY SUMMIT
  • EMAG
    • eMagazine
    • Archive Issues
    • Editorial Advisory Board
    • Contact
    • Advertise
  • SIGN UP!
Contamination ControlAllergen Control

Allergens and GMO: What is Happening in Control Programs?

Allergen control programs are now nearly universal, but analytical testing may be less common than expected

By Bob Ferguson
a stainless-steel industrial conveyor belt carrying rows of uniform, brownish rectangular bars
Image credit: sergeyryzhov/iStock/Getty Images Plus via Getty Images
August 28, 2026

Allergens are a crucial part of a comprehensive food safety program and essential to your customer's safety and your regulatory compliance. The same applies to genetically modified organisms (GMOs). Consumers want to know about the presence of GMOs in your products, and labeling laws require you to know, too. How you handle both issues is an important part of your food safety program. 

Welcome to Part 1 of a two-part series on the state of the allergen and GMO control and testing programs being used by food processors. Part 1 focuses on what we heard from you about your allergen programs.

Our latest Food Safety Insights survey shows that allergen control programs are now nearly universal among respondents. These programs have a number of elements that will be familiar to a food safety professional, but analytical testing—an area we often cover here in Food Safety Insights—may be less common in many facilities than might be expected. 

We received responses from a wide range of food safety, quality, and technical professionals. About 27 percent identified as having a quality assurance/quality control (QA/QC) role, 29 percent as food safety specialists/food technologists, and nearly 10 percent as laboratory managers, microbiologists, or chemists, with the rest in regulatory, general management, and other technical roles (Figure 1).

FIGURE 1.  What is Your Role in Food Safety? (Credit: B. Ferguson)

Respondents represented a diverse set of product categories: prepared/processed foods and RTE meals (18 percent), ingredients/spices/flavors (12 percent), baked goods (10 percent), dairy and meat/poultry (about 8 percent each), and smaller shares from beverages, grains, pet foods, snack foods, and fresh-cut produce, with several "other" categories including food packaging and cleaning chemicals (Figure 2).

Geographically, roughly two-thirds of respondents were from the U.S., with other responses from Canada, Europe, Asia, and other regions.

This profile gives us a cross-section of operations that are directly handling allergens, supporting allergen-containing supply chains, or managing allergen risks as part of broader food safety programs.

Looking for quick answers on food safety topics?
Try Ask FSM, our new smart AI search tool.
Ask FSM →

FIGURE 2.  What Food Processing Category Do You Represent? (Credit: B. Ferguson)

Allergen Control Programs are Nearly Universal

As expected, most of the companies surveyed (96 percent) reported that they have an allergen control program in place. Their descriptions of the complexity of their programs ranged from very mature programs with multiple recognizable elements (e.g., color-coding, validated cleaning protocols, analytical testing) to minimal operations where allergens are not expected to be handled in their facility, but written procedures and training are in place anyway. A few respondents noted that financial constraints limit their ability to have a more robust program, even though they recognize the need to strengthen controls.

What is Working—And What is Not

Anticipating that there would be a range of programs and strategies employed, we also wanted to hear what survey respondents thought were the most effective elements of their programs. The most frequently mentioned elements were:

  • Segregation and dedicated storage/production lines
  • Production scheduling
  • Cleaning and sanitation, often with verification using protein swabs, ATP, or allergen-specific tests
  • Label review and approval processes and clear allergen identification on labels and visual boards
  • Training and communication programs.

With the same expectations in mind that no program is perfect, and many elements of strict allergen control can be challenging, we also asked what respondents considered to be the least effective or most difficult elements of their programs. The issues most frequently mentioned were not surprising, but rather common issues that are important to understand and constitute critical areas of failure of many programs:

  • People: Employee habits, including outside lunches, vending, and other food brought into the plant; turnover and inconsistent levels of training; and staff who are not engaged (or as one person mentioned, "do not seem to be interested in allergen management")
  • Scheduling and changeovers: Complex changeover procedures for cleaning, validating low thresholds on multiple lines, and the readiness of proper cleaning equipment for changeover to non-allergen production
  • Supply chain data: Constituents of compound ingredients; long, difficult-to-trace supply chains (especially for herbs, spices, and grains) that make getting complete allergen information from suppliers difficult; and managing allergen label inventory
  • Physical environment: Control of dust and airborne contamination, shared farm and storage equipment, shared surfaces, and constraints on segregated storage space
  • Cost and complexity: Costs associated with validation, complexity due to multiple allergens and proprietary blends, and limited resources for testing.

Allergens of Greatest Concern

Respondents reported a wide range of allergens of concern, with most aligned with their particular processing categories, but several patterns stood out in our survey. When asked about "top allergens of concern," respondents most frequently cited:

  • Milk, gluten/wheat, soy, and tree nuts
  • Peanuts and sesame (often in combination with tree nuts and other allergens)
  • Egg, fish, shellfish, and sulfites.

In a follow-up question on "other allergens of concern," about half of respondents selected wheat/gluten, and roughly one-third selected eggs, milk, soybeans, and tree nuts. Sesame, peanuts, and sulfites were mentioned by roughly 30 percent, with smaller shares for celery, mustard, fish/shellfish, lupin, and other ingredients such as rye or particular fruits. Several respondents noted that they must be prepared to manage "all U.S. Food and Drug Administration (FDA) allergens except fish and shellfish," or "all 13 [allergens] except lupin," reflecting operations that are serving export markets or needing to comply with broader international allergen lists other than the U.S. "Big 9."

Limited Analytical Testing

Despite the near-universal presence of allergen control programs, only about 61 percent of respondents reported that they conduct analytical testing for allergens. Nearly 39 percent said they do not conduct allergen testing, mainly because they do not handle allergens in their facility, rely on certificates of authenticity from suppliers, or have limited resources and a low perceived risk.

Among those who indicated that they do conduct analytical testing:

  • Many use allergen testing primarily for changeover verification or program validation (e.g., quarterly gluten-free verification or post-cleaning allergen swabs)
  • Several respondents mentioned using allergen-specific kit tests with specific detection limits (e.g., 20 µg) for particular allergens
  • Many emphasized ATP or total protein tests as their primary verification tools, with allergen-specific testing used more selectively.

The volume of testing varied widely from those mentioning little/no testing or infrequent/periodic test collection, to operations reporting up to 60 allergen tests per week. In many facilities, allergen testing also appears to be event-driven: tests are conducted when changing products or formulations, initiating production on allergen-containing lines, or when production or customer requirements trigger testing.

In-Plant Testing

For companies that reported conducting in-plant testing, we asked which types of tests they use to support their environmental monitoring and sanitation programs. Their responses were:

  • About 48 percent reported using protein residue swabs
  • 27 percent use allergen-specific lateral flow immunoassay (LFA) test strips
  • 27 percent use ATP tests
  • Around 21 percent send samples to outside labs for sanitation-related assessments
  • Only a small share reported using ELISA or PCR/qPCR for their in-plant tests.

How Facilities Test Products

For end-product samples, the story is different as respondents more commonly rely on outside laboratories. When asked how they test end-product samples for allergens, respondents said:

  • Greater than 50 percent send samples to outside labs
  • Approximately 26 percent use allergen-specific LFA test strips
  • Around 11 percent use allergen-specific ELISA immunoassay tests
  • A small number send samples to an in-house lab
  • 13 percent said they do not conduct finished product testing.

Our survey results spell out what many people might expect to see: the use of a wide range of strategies tailored to processing category and allergen risk assessment. Companies also employ a broad range of technologies, with an emphasis on practical, onsite tools. For many facilities, the practical strategy of choice is to use rapid, easily deployed indicators (e.g., ATP and protein swabs) to monitor cleaning on an as-needed or daily basis, and to layer allergen-specific tests and outside lab support where risk, regulatory requirements, or customer expectations justify the added cost and complexity.

Look for Part 2 of this series in the October/November features compilation, where we will discuss the impact on the size and growth of the global allergen testing market. We will also look at how companies are managing GMOs in their products and the core elements of those programs.

KEYWORDS: allergens

Share This Story

Bob ferguson

Bob Ferguson is president of Strategic Consulting Inc. and can be reached at bobferguson9806@gmail.com or on Twitter at @SCI_Ferguson.

Recommended Content

JOIN TODAY
to unlock your recommendations.

Already have an account? Sign In

  • people holding baby chicks

    Serovar Differences Matter: Utility of Deep Serotyping in Broiler Production and Processing

    This article discusses the significance of Salmonella in...
    Meat/Poultry
    By: Nikki Shariat Ph.D.
  • woman washing hands

    Building a Culture of Hygiene in the Food Processing Plant

    Everyone entering a food processing facility needs to...
    Facilities
    By: Richard F. Stier, M.S.
  • graphical representation of earth over dirt

    Climate Change and Emerging Risks to Food Safety: Building Climate Resilience

    This article examines the multifaceted threats to food...
    Risk Assessment
    By: Maria Cristina Tirado Ph.D., D.V.M. and Shamini Albert Raj M.A.
Manage My Account
  • eMagazine Subscription
  • Subscribe to Newsletters
  • Manage My Preferences
  • Website Registration
  • Subscription Customer Service

More Videos

Sponsored Content

Sponsored Content is a special paid section where industry companies provide high quality, objective, non-commercial content around topics of interest to the Food Safety Magazine audience. All Sponsored Content is supplied by the advertising company and any opinions expressed in this article are those of the author and not necessarily reflect the views of Food Safety Magazine or its parent company, BNP Media. Interested in participating in our Sponsored Content section? Contact your local rep!

close
  • Man In Warehouse
    Sponsored byRentokil

    Mitigating Hidden Rodent Risks in Food Facilities

  • an industrial manufacturing or processing facility
    Sponsored bybioMérieux

    Get Ahead of Spoilage in Food Manufacturing with Metagenomics for Preventive Monitoring

  • an automated industrial production line used in a modern food factory
    Sponsored byIFC

    A Formula for Food Processing Pest Management

Popular Stories

Gummy supplements

FDA's Proposed Mandatory GRAS Rule: What Food Safety Professionals Need to Know

listeria

FDA’s Listeria Prevention Public Meeting: Experts Debate Zero Tolerance, Emphasize Environmental Monitoring and Fundamental Controls

managing Food Allergens eBook

eBook | Managing Food Allergens Across the Supply Chain: A Practical Guide to Prevention and Compliance

allergens ebook

Events

September 1, 2026

Seafood Under the Microscope: FDA HACCP, Pathogen Risk, and Modern Testing Strategies

Live: September 1, 2026 at 2:00 pm EDT: Attend this webinar to learn how environmental monitoring, rapid pathogen detection, and risk-based testing strengthen seafood safety programs.

September 2, 2026

From Crisis to Control: A Listeria Elimination Journey in Food Manufacturing

Live: September 2, 2026 at 2:00 pm EDT: This webinar shares a real-world case study of a food processing facility that solved a persistent Listeria challenge after standard protocols fell short.

September 10, 2026

Stop Rodents in Their Tracks!

Live: September 10, 2026 at 2:00 pm EDT: Attend this webinar to understand rodent behavior and innovative strategies for rodent management.

View All

Products

Global Food Safety Microbial Interventions and Molecular Advancements

Global Food Safety Microbial Interventions and Molecular Advancements

See More Products

Related Articles

  • sanitizers

    Supply Chain Woes – What is At Stake, and What Will Change?

    See More
  • Adoption of WGS: What Is Going On?

    See More
  • assorted nuts low-moisture food

    Conference on Cleaning, Sanitation for Low-Moisture Food Production Happening in Minnesota in April

    See More

Related Products

See More Products
  • 9781138198463.jpg

    Food Safety Management Programs: Applications, Best Practices, and Compliance

  • 9781032369990 (1).webp

    Food Safety Quality Control and Management

  • 9781138070912.jpg

    Trends in Food Safety and Protection

See More Products

Related Directories

  • Rentokil Pest Control

    Delivering solutions to food businesses for over 100 years, Rentokil is the single-source provider for your pest management needs. Our local technicians deliver customized programs and innovative solutions, ensuring regulatory compliance and audit readiness. To help you drive your business, our secure PestNetOnline platform provides detailed service data and reporting.
  • Plunkett's Pest Control

    Plunkett's has the experience, dedication, and specialized pest management programs to meet your company's needs for over 100 years. We offer commercial pest control services for many industries and businesses, including Food and Beverage Processing; Distribution and Storage; Medical Manufacturing; Pharmaceutical; Agriculture; Multi-Housing; Hospitality and Hotels; Healthcare; Large Retail and Mall; Food Retail and Grocery; Restaurant; Bar and Tavern; Education; Mass Transit and more!
×

Never miss the latest news and trends driving the food safety industry

Newsletters | Website | eMagazine

JOIN TODAY!
  • RESOURCES
    • Advertise
    • Contact Us
    • Directories
    • Store
    • Want More
  • SIGN UP TODAY
    • Create Account
    • eMagazine
    • Newsletters
    • Customer Service
    • Manage Preferences
  • SERVICES
    • Marketing Services
    • Reprints
    • Market Research
    • List Rental
    • Survey/Respondent Access
  • STAY CONNECTED
    • LinkedIn
    • Facebook
    • Instagram
    • X (Twitter)
  • PRIVACY
    • PRIVACY POLICY
    • TERMS & CONDITIONS
    • DO NOT SELL MY PERSONAL INFORMATION
    • PRIVACY REQUEST
    • ACCESSIBILITY

Copyright ©2026. All Rights Reserved BNP Media, Inc. and BNP Media II, LLC.

Design, CMS, Hosting & Web Development :: ePublishing